I can only go by my experience here, and I have experience with both. The hybrid is dead simple, known, proven technology. I have no doubts it will give many more miles of trouble free service than the 2.0 Ecoboost. Plus, the strain on other drive-line components, brakes, and the engine itself is greatly reduced with the hybrid.
The 2.0 will feel a lot more powerful, can tow more if so equipped, and is available in AWD. So yes, "better" is purely subjective.
I wanted an efficient, cheap to own and maintain vehicle. Those were my primary concerns. Ford 2.5 eCvt based hybrids have proven themselves to me in this regard, hands down. I hope this doesn't prove to be an exception to the rule.